Teaching material for the course on Models and Languages for Bioinformatics

Teaching material (Seminars 2019)

• Introduction to molecular biology (March 5-12, 2019)
• Sequence comparison and alignment (March 13, 2019).
• Theory of evolution (Phylogenetic trees) (March 25, 2019)
• Long-Short Term Memories for the identification of helical moieties in proteins (March 27, 2019)
• Using sight to exploit molecular knowledge (April 2, 2019)
• Process Calculi for Biological Processes (May 21, 2019)
• The Biopython Project (May 22, 2019)
• Introduction to Constraint Logic Programming (Tutorial).
• Slides on Constraint Logic Programming (2019).

Teaching material (Tutorial: The Logic Programming Paradigm and Prolog, by K. Apt)

• Tutorial on LP and Prolog (by K. Apt)

Teaching material (Prolog Exercises)

• Prolog Exercises 1
• Prolog Exercises 2
• Prolog Exercises 3
• Prolog Exercises 4

Teaching material (Examples of intermediate tests)

• Example of first intermediate test on Prolog programming
• Example of second intermediate test on Python programming

Teaching material (Tutorial: Python Programming -- 3.XX)

• Tutorial on Python, release 3.XX
• Python official web site

Teaching material (Python Exercises)

• Python programming exercises.
• Python programming exercises (2).
• RE module (Regular Expressions) -- Python programming exercises (3).

Old material (Seminars)

• Introduction to biology
• Protein structure and dynamics (April 19, 2018)
• A case study of mathematical modeling in immunology (May 17, 2018)
• Proteins, 3D representation.
• Proteomics and Precision Medicine (April 12, 2017)
• Next generation sequencing.
• The B-side: an insight into the immune response.
• Post genomic revolution in Life Sciences.
• Slides on A Constraint-based Modeling Approach for Biochemical Systems. (2016)
• Slides on Constraints and Bioinformatics. (2016)
• Machine Learning applied to Vaccine research. (2016)
• Modelling infectious diseases (May 4, 2017)

Presentation of Siena Artificial Intelligence Laboratory

• Programme of Sailab presentation (Room 201, DIISM, March 6-7, 2019)